PhasedVLMarkov Class Reference

Phased Variable Length Markov modelling, estimation and simulation. More...

#include <seqpp/PhasedVLMarkov.h>

Inheritance diagram for PhasedVLMarkov:

List of all members.

Public Member Functions
template<class TSeq>
	PhasedVLMarkov (const TSeq &tseq, vector< double > &init, double cutoff, short phase, short initial_phase=0)
	Constructor 1 from a SequenceSet or a Sequence.
template<class TSeq>
	PhasedVLMarkov (const TSeq &tseq, double cutoff, short phase, short initial_phase=0)
	Constructor 2 from a SequenceSet or a Sequence with random init.
	~PhasedVLMarkov ()
	destructor
Protected Attributes
vlm_tree *	_vlmtree
	Variable Length Context Trees.

---

Detailed Description

Phased Variable Length Markov modelling, estimation and simulation.

PhasedVLMarkov is a PhasedMarkov object with a different estimation step. This object performs the estimation with the Variable Length Markov algorithm and then transfoms, once per phase, the variable length context tree in a markovian matrix. One difference is that a cutoff is required for the selection of the tree.

---

Constructor & Destructor Documentation

template<class TSeq>

PhasedVLMarkov::PhasedVLMarkov	(	const TSeq &	tseq,
		vector< double > &	init,
		double	cutoff,
		short	phase,
		short	initial_phase = 0
	)			[inline]

Constructor 1 from a SequenceSet or a Sequence.

Parameters:

	tseq	a (set of) sequence(s) for estimation
	init	initial law in the leaves
	cutoff	tree selection cutoff
	phase	phase
	initial_phase	phase of the first element of each sequence

References PhasedMarkov::_nb_param, PhasedMarkov::_order, PhasedMarkov::_Pis, PhasedMarkov::_size, and _vlmtree.

template<class TSeq>

PhasedVLMarkov::PhasedVLMarkov	(	const TSeq &	tseq,
		double	cutoff,
		short	phase,
		short	initial_phase = 0
	)			[inline]

Constructor 2 from a SequenceSet or a Sequence with random init.

Parameters:

	tseq	a (set of) sequence(s) for estimation
	cutoff	tree selection cutoff
	phase	phase
	initial_phase	phase of the first element of each sequence

References PhasedMarkov::_nb_param, PhasedMarkov::_order, PhasedMarkov::_Pis, PhasedMarkov::_size, and _vlmtree.

---

The documentation for this class was generated from the following file:

• PhasedVLMarkov.h