/* Physical Viewer CSS */

div#PhysicalViewer {
  width: 100%;
  height: calc(100%  - var(--title-height) - 5px);
  z-index: 3000;
  border-radius: 0px 0px 5px 5px;

}



.axis text {
  font-family: Verdana, Arial, Helvetica, sans-serif;
  font-size: 1em;
}

.axis line {
  shape-rendering: crispEdges;
  stroke: var(--a-color);
  opacity: 0.2;
  stroke-width: 1px;
}

/* Below, we set the tick length to 10px. The stroke-dasharray only displays 6px to create a minor tick effect. */
.axis .minor line {
  stroke: red;
  stroke-width: 1px;
  opacity: 0.1;
  stroke-dasharray: 6,4;
}


/* Pour les features */
g.Motif g.highlight {
  stroke : red;
  stroke-width: 5px;
  fill: white;
  z-index: 10;
}


g.highlight {
  stroke : red; 
  fill: red;
 /* stroke-width: 3px;*/

  z-index: 10;
}


/* Feature Colors */
.gap {
  stroke: #818181;
  fill: #818181;
}

.PFAM {
  stroke: #64191e;
  fill: black;
}

.est_cdna {
  stroke: #bc09bc;
  fill: #bc09bc;
}

.SeqFeature {
  stroke: #bc09bc;
  fill: hsl(63, 100%, 50%);
}

.tRNA,
.miRNA,
.other_ncRNA,
.npcRNA,
.ncRNA,
.snRNA,
.rRNA,
.snoRNA {
  stroke: #000000;
  fill: #ff4a2d;
}

.MIR{
  stroke: #000000;
  fill: #ffff00;
}

.user {
  stroke: #ff0000 !important;
}



.helixer_CDS {
  stroke: #aa2d00;
  fill: #aa2d00;
}
.helixer_mRNA {
  stroke: #f78a46;
  fill: #f78a46;
}


.curated_CDS {
  stroke: #eb2196;
  fill: #f710dc;
}


.CDS {
  stroke: #0000ff;
  fill: #0000ff;
}


.BLASTCDS {
  stroke: #fb7fc8;
  fill: #f860ca;
}


.misc_feature {
  stroke: #f29239;
  fill: #ef8a37;
}


.CDSDensity {
  stroke: #0000ff;
}


.Blast {
  stroke: #f9735a;
  fill: #eb4f0a;
}


.CDS .no{
  background-color: #0000ff;
  color: white;
  stroke: #0000ff;
  fill: #0000ff;
  font-size: 11pt;

}

.CDS .nucleus{
  background-color: #ffff00;
  color: black;
  stroke: #ffff00;
  fill: #ffff00;
  font-size: 11pt;

}

.CDS .plastid{
  background-color: #00ff00;;
  color: black;
  stroke: #00ff00;
  fill: #00ff00;
  font-size: 11pt;

}

.CDS .endo_reticulum {
  background-color: black;
  color: white;
  stroke: black;
  fill: black;
  font-size: 11pt;

}

.CDS .mitochondria {
  background-color: red;
  color: black;
  stroke: red;
  fill: red;
  font-size: 11pt;

}

.FST,
.SNP {
  stroke: black;
  fill: #ff0000;
}

.mRNA {
  stroke: #3bd1e1;
  fill: #3bd1e1;
}


.mobile_element {
  stroke: none;
  fill: #c5c5c5 ;
}

.repeat_region,
.Repeat_Element {
  stroke: white;
  fill: #949494 ;
}

.TE  {
  stroke: rgb(255, 153, 36);
  fill: #ffd6a0 ;
}


.MPSS_smallRNA {
  stroke: black;
  fill: #57f700 ;
}

.MPSS {
  stroke: black;
  fill: #00d5e4 ;
}

.AFFYMETRIX {
  stroke: #ff4851;
  fill: #ff4851 ;
}


.Repeat_TAIR {
  stroke: #949494 ;
  fill: #949494 ;
}


.CDS_Eugene {
  stroke: black;
  fill: #9800d0;
}

.CDS_Jigsaw {
  stroke: black;
  fill: #b1f0d3;
}

.LTR{
  stroke: #5f84e9;
  fill: #5f7fe9;
}


.PPR_CDS {
  stroke: black;
  fill: #e2a812;
}

.PPR_motif {
  stroke: black;
  fill: #e2a812;
}

.PPR_motif .S{
  stroke: #e9e05f;
  fill: #e9e05f;
}

.PPR_motif .P{
  stroke: #e2a812;
  fill: #e2a812;
}

.PPR_motif .L{
  stroke: #ca7f1e;
  fill: #ca7f1e;
}

.PPR_motif .E{
  stroke: #68ba2a;
  fill: #68ba2a;
}

.PPR_motif .eplus{
  stroke: #5f965e;
  fill: #5f965e;
}

.multi {
  stroke: black;
}

.SMAR{
  stroke: #b67d3e;
  fill: #b67d3e;
}

.CDS_GeneFarm {
  stroke: black;
  fill: #008300;
}

.CDS_Alternative {
  stroke: black;
  fill: #000eff;
}

.mRNA_Alternative {
  stroke: black;
  fill: #33d3e4;
}


.GST {
  stroke: #af26fb;
  fill: #af26fb;
}

.MIRSPOT {
  stroke: #df76fe;
  fill: #df76fe;
}

.ChromoChip {
  stroke: #ffa713;
  fill: #ffa713;
}


.SNP_probe {
  stroke: #ffa713;
  fill: #ffa713;
}

.CATMA_v6 {
  stroke: #c100b3;
  fill: #c100b3;
}

.TPS,
.CHS,
.RGA,
.STS {
  stroke: black;
  fill: #008300;
}

.NimbleGen,
.NimbleGen_v1, 
.Agilent_v1 {
  stroke: #ebc100;
  fill: #ebc100;
}


.RseqContig_Flowers{
  stroke: #ebc100;
  fill: rgb(97, 80, 2);
}

.RseqContig_MixOrgans{
  stroke: #524817;
  fill: rgb(215, 201, 141);
}

.notextfeat {
    stroke: none;
    fill: none;
    color: none;
    display: none;
}
.txtfeat {
  -webkit-text-stroke: unset;
  font-family: 'open sans',arial,sans-serif;
  text-anchor: middle;
  stroke: none;
  font-size: 9px;
}



.classI { 
  mask: url(#checked-mask);
  fill: red;
}
 


.classII { 
  mask: url(#checked-mask);
  fill: rgb(25, 0, 255);
}