Toggle navigation
TopoIBase
Data
Taxonomy and VLD families
Downloads
My selection
Upload to selection
Selection 1
Selection 2
Selection 3
Tools
Blast
MUSCLE
VLD
About
How to use
Acknowledgements and references
Contact
Tests
Search more
Download
fasta
tsv
Download
Blast
Muscle
VLD
Add to selection
Selection 1
Selection 2
Selection 3
All selections
Taxon : Bifidobacteriales
Informations
Name
Bifidobacteriales
Rank
order
# topoisomerases
9
Lineage and sub-taxa
Lineage
Bacteria
>
Actinobacteria
>
Actinobacteria
>
Actinobacteridae
>
Bifidobacteriales
Sub-taxa
Topoisomerases
Select all
Name
Family
Sequence
(193) DNA topoisomerase 1 [Bifidobacterium dentium Bd1]
8
MATGSKLVIVESPTKARKIGGYLGSDYTVMASVGHIRDLAQPSQVPSADKAKFGKFGVDVEDGFKPYYIVDGDKKKTVSELKSALKKADTLYLATDEDREGEAIAWHLVQTLKPKVSIKRMVFHEITPEAIKASLNNTRDVDGAMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFVRAPYWDVTATLEAMGAEGDNVAFDSRMVSLDGRRLAGSKDFGEDGLLTAAGAKDNVVQLDETQARALAQSLEFATFTVTSMESKPYRRRPLPPFTTSTLQQTAGNRLSMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAARSAVKSHFGDTFLSDAPKQYATKTAGAQEAHECIRPAGAQFRDPDEVAKKVPADQARLYALIWQRTLASQMADATGSTATVRLSASAGDQGEAVFQASGTVIEFPGFMKATGEGRHASSDRATDKTAEQSVKANDDNASLPPMRPGDELAATEVAADGHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFSVVKLLETKFPKYVDYQFTADMENGLDQIAHGMETGKDWLTSFYFGSGEGAAQSQDEAHAGLQQQVAQLGEIDARAINTIEIGDGLHVRVGRYGPYLEDVNDLDGEGNPKRASLPDTLAPDELTVEVGHDLIEHHSGGPRELGKDPVSGGTVEVRNGRFGPYVALIVPQSEAAGDAAAAQAKPQRGSKKAAADRPKMASLFKTMSPESLTLEDALKLLSLPREVGTYEEANAETGELQQVTVMANNGRYGPYLTKTGADGKSDTRSLASEDEIFTVDLDKAKELFSQPKYGRGRGRGAAKPPLRDLGVDPETQKHVTIKEGFYGAYITDGETNRTLPKQYAAESIEPAEAFRLLAEKRAQGPSKRGRGRKASAKKTTAKSTKAGKPNAIEKARADRRAKVRELADQGWANTRIAKEIGSTAATVKADIDWLTANEGYFRPEVVPAR
(1715) DNA topoisomerase 1 [Bifidobacterium adolescentis ATCC 15703]
8
MAMATGSKLVIVESPTKAKKIGGYLGSGYTVMASVGHIRDLAQPSQVPAAEKAKYGKFGVDIEDGFKPYYIVDGNKKKTVADLKSALKKADTLYLATDEDREGEAIAWHLVQTLKPKVPVKRMVFHEITPEAIKASLNNTRDVDAAMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFVRAPYWDVTATLEAPDADGNNVAFDSRMVSLGGRRLAGSKDFGDDGQLTAAGVKDNVVQLDETHANAIARSLEYATFTVSSMETKPYRRRPVPPFTTSTLQQTAGNRLGMSSRQTMRAAQGLYENGFITYMRTDSVTLSQEAIAAAREAVSRHFGEKYLSDAPKQYATKTAGAQEAHECIRPAGAHFRDPAEIATKVPADQLKLYTLIWQRTLACQMADATGSTATVRLSSPTEADGEAMFQASGTVIEFPGFMKATGEGRRSVVDAKKSAEAAGVKIGDKAEKSAKASKKTDDNVSLPPMQPGDELAAVDVAADGHETQPPARYTEASLVKTLEQKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFSVTKLLETKFPKYVDYEFTADMETGLDQIAGGHETGKAWLTRFYFGSGDGAAQSADEAHEGLQQQVAQLGEIDAREINTIDIGDGLHVRVGRYGPYLEDMKHLDAEGNPKRASLPDTLAPDELTVEVGHDLIENHSGGPRELGKDPVSGGTVEVRNGRFGPYVALVMPSAEDAGDTAAESAAGKAGKTKRSGGKKAASDRPKMASLFKTMSPESLTLEDALKLLSLPREVGSYDEANAETGEMQTVTVMANNGRYGPYLTKTGADGKSDTRSLASEDEIFTVDLEKAKELFAQPKYGRGRGRGAAKPPLRDLGTDPETQKHVTIKDGFYGAYITDGETNRTLPKQYAPESIEPAEAFRLLAEKRAQGPSKRRGRKTAAKGAKKGAAKGAKSAKKVSATEQARADRRAKVRELADKGWANTRIAKEIGSTASTVKADVDWLTANEGYARPEVVPAR
(1038) DNA topoisomerase 1 [Bifidobacterium bifidum PRL2010]
8
MGTGNKLVIVESPTKAKKIGGYLGSGYTVMASVGHIRDLAQPSQIPADDKARFGKFGVDVDDGFKPYYIVDGDKKKTVAELKKALKNSDELYLATDEDREGEAIAWHLVQTLKPKVPVKRMVFHEITKDAIKASLGNTRNVDEDMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFVRASYWDVTAVLGATDAEGEPASFESRMVSLGGKRLAGSKDFSDDGKLAPSGFADNVCQLDEAHANALAKLLADATFTVASMETKPYRRRPFPPFTTSTLQQTAGNRLSMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAARDAVEYHFGKSFLSDGPKQYVTKTASAQEAHECIRPAGARFHDPAELSGKVPADQLKLYTLIWQRTLASQMADATGSTATVRLSAPAGEDGEAMFQASGTVIEFPGFMKATGEGRRAAAPAASSMGAGDGEVAAKRASRETDDNGSLPPMQTGDRLAASSVEADGHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFSVIKLLETKFPKYVDYQFTADMENGLDQIAHGQETGRDWLTHFYFGSGGDVATSADEAHAGLQQQVAQLGEIDARAINTIDIGDGLHVRVGRYGPYLEDMNHVDAAGNPKRASLPDTMAPDELTVQVGHELIDSNAGGPRELGVDPASGGTVEVRNGRFGPYVALVPLETDGGSSETKSKKTTVPKPKMASLFKTMSPESITLDDALKLLSLPRTVGVYEEANTETGELGEVTVEANNGRYGPYLTKTGADGKSETRSLASEDEIFTVDVDKAKELFAQPKYGRGRGRGTAKPPLRELGPDPETGKNVTIKDGFYGAYITDGETNRTVPKQYTAESIEPAEAFRLLAEKRAAGPSKRGRRKTTGATAKKTAAKKSSTASATKKTAAAKKTAAKKTTARKTAAKKTVE
(290) Topoisomerase III [Bifidobacterium longum subsp. longum KACC 91563]
7
MKLVIAEKKSVATAIAQALCAAPVQRDGCYECGQLLVTWAQGHLIDLAMPEDYKDRDWRKWSLDTLPVDPSGHWQWKISAERGAGSRYRQIVQLIRRADVDCLVNACDPDREGEAIFRRIADMEGSHKPELRLWVASLEAEAIQAAWRAMKPESEYQGLAWSAEIRSKADWLIGMNASRAYSLLYNARFSVGRVQTPTLAMIAERDRQIRNHKPVPFWTVIADMGGWRLSSERIDSKDAAMLLCGQAEHGRFRIMSVNRRRVNDRPPRLYDLTGLQKDMSRLHGMTAARTLQALQHLYELKLATYPRTDSRYITHDDLETLTALLESGRLAQGFVTREGIPGHPRPELAVNDAKVAGHTAILPTMQLDAGKLEGLDDDERKVMTRIVRRMWEAVGDDHVHIVTEVKARLSDDTDREFSSRSDETVSAGWKAVETGHGPEPEDEETANPAGGRNVIPSNLMEGGVIRPVGKVTVEEGETRPPKPFTEATLLAAMEHASRCVEDKNLKAALDDDESHSGGIGTPATRADTIEKLVRSKLVERKGRQLHATTEGERLTDVVEPRLKDVLLTARMEQALSDVEHGKRDPADVMDMFHREALRIPADATANLKADAVTRTTNTDAQEWGDCPRCGQPVRKTGRMWQCSTNKSEKTKDGKWIAVEGCGWKMYASLAGKTITDQTARRLLAGQTVTLKGFTSKSGKKFDAAIRIDKERGTAFDFDR
(1813) DNA topoisomerase 1 [Bifidobacterium longum subsp. longum KACC 91563]
8
MATKLVIVESPTKAHKIGDYLGKGYTVMASVGHIRDLAQPSQVPAADKAKFGKFGVDVNDGFKPYYIVDGDKKRTVSELKSALKNADELYLATDEDREGEAIAWHLVQTLKPEVPVKRMVFHEITKNAINASLNNTRDVDGNMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFKRAPYWDIVATLSAPDALGERAEFSARMIALGGKRLAGSKDFGADGQLTPDGFAANVRQLDEAGATAVASALKTADFTVMSMETKPYRRRPQPPFTTSTLQQTAGNRLGMGARAVMRAAQSLYENGYITYMRTDSVTLSQEGITAARNAVSYHFGDKFLSAEPKQYATKTAGAQEAHECIRPAGSRFHDPDELASKLPGDQLRLYTLIWQRTLACQMADATGSTATVRLSAPAGPTEGEAVFQASGTVIEFPGFMKATGEGRKPKAAAPGAGAGSDQAAAAGKTDAKAVRGDASESNTSLPPMSVGQQVEASDIEPDGHETQPPARYTEATLVKTLEAKEIGRPSTYASIISTIMDRGYVYERGRALIPSWLAFSVTKLLETNFPKLVDYQFTAEMENGLDRIAHGEESGRDWLTHFYFGSGEGAARNADEAHEGLQQQVAQLGEIDARAINTIDIGDGLHVRVGRYGPYLEDMEHLDAEGNPKRASLPDTIAPDELTVAVARDLIDNHSGGPRELGVDPVSGGTVEVRNGRFGPYVALVPPAEASAGAAGDTAGASAAKKGSKKAAAAAASRPKMASLFKTMSPESLSLEDALKLLSLPREVGTYEETNAETGEVSECTVAANNGRYGPYLTKTGADGKSETRSLASEDEIFTVDIDKAKELFSQPKYGRGRGRGAAKPPLRDLGKDPNTGKNVTIKDGRFGAYITDGETNRTVPRQYTPESITPDDAFRLLAEKRAAGPSTRGRRGAGRAGGAKAVAGKGKKGGTSAAVSAQEAKRAERRAEVKKLANKGWSNQRIAEKLGSTPATVKKDVDWLTANEGYERPAVIPKRG
(282) DNA topoisomerase 1 [Bifidobacterium animalis subsp. lactis CNCM I-2494]
8
MDSSGKVRRAIMTTGSKLVIVESPAKAKKIGGYLGDGYTVLASVGHIRDLAQPSQVPADEKAKFGKFGVDVNDGFKPYYIVGPEKKKTVSELRSALRNASELYLATDEDREGEAIAWHLVQTLKPKVPVKRMVFHEITPEAIRASLEHTREVDNNMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFVRAPYWDVVATLCAPDALGEPTDFESRMIALNGTRLATSKDFKSDGTLTDAARTDGVVQLGESQAGDLADALADARFRVISVEKKPYRRRPQPPFTTSTMQQAAGNRLGMSSRQTMRAAQSLYENGYITYMRTDSVTLSHEAIEAARESVSKNFGSQYLSEKPKQYATKTAGAQEAHECIRPAGSHFRDPSQLATLPPDQLKLYTLIWQRTLASQMADATGSTATARFAASAGGLGEATFQSSGTVIEFPGFMRVTGERGGSGKKGEESASLPPLAESAELPAKSVLADGHETQPPARYTEASLVKTLEAKEIGRPSTYANIISTIIDRGYVYERGRALIPSWLAFAVTRLLETKFPKYVDYQFTADMENGLDQIAHGNETGREWLTQFYFGSGADSARSADEAHEGLQRQVAQLGEIDAREINTIPIGDGIHVRVGRYGPYLEDTKDLDAEGNPKRASIPDTIAPDELTVGEARKLIASNAGGPRVLGTDPATGGTVEVRNGRFGPYVALVAPESAHESAPTGKKKAAEPKPKMASLFKSMKPETVTLDDALRLLSLPRTVCTYDEVDAKTGETVSVTISASNGRYGPYLTKTRADGGASETRSLESEDAIFTVDETHAQALFAQPKYGRGRGAAKPPLRTLGPDPESKREVSIKEGFYGAYITDGETNRSLPKQYDPKTISAEDAFRLLAEKRAAGPSKRRGRKGKASAKSTGKGTAKGRKSAPKKSATETARDRRRKQVRELAEQGWANTRIAKEIGSSAATVKADVEYLEANEGFKRPPVVPAK
(152) DNA topoisomerase 1 [Gardnerella vaginalis HMP9231]
8
MTEQNKLVIVESPTKARKIGGYLGSGYTVMASVGHIRDLAQPSQVPAAKKAEFGKFGVDVNNGFEPYYVVGADKKKTVSDLKAALAKSGELFLATDEDREGEAIAWHLVQALKPKVPVKRMVFHEITKDAIQASLANTRNVDDHMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFKKASYWDVCADLSANGVDFQARMTALNGERLAASKDFNSLGELQKTKGESALAHYLNEADACAIAQSLGAADFVVSSMDTKPYRRRPLPPFTTSTLQQTAGNRLSMSSRQTMRAAQSLYENGYITYMRTDSVTLSKEAIFAARDCVKSSFGDEYLADSPKQYATTSAGAQEAHECIRPAGSTFRNPADLAGVLPADQLKLYTLIWQRTLASQMADATGFTATVKLDASAGSFGTANFQASGTVIEFAGFMKVFGGFSEDEQSKALPPMANGDVLKALRVSADGHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFAVIKLLESNFPTYVDYAFTADMENGLDRIAHGEEAGKDWLYKFYFGDNGAVAGDFAMHEGLQKQVDQLGEIDAREINTIDIGGGLHVRVGRYGPYLEDTKNLDEEGNARRASIPSTLAPDELTEQVARDLIENNSDGPRVLGTDPQTGGSVEVRNGRFGAYVALVEASDEDESQASDDSAKTGAKSSAKSKKSAKAKPKMASLFKTMDPATITLQDALRLLNLPRLVGIVEEVDEQGEVKRAKIEANNGRYGPYLTKTYERADAGDSAAAVDAKPDNRSLASEDAIFSVTLDEAKELFAQPKYAKRTRGAAKPPLRELGEDPESGKAVVIKDGFYGAYITDGVTNRTLPKQYTPESIEPQVAFELLAQKRAAGPVKRKRTAAKKTATKKTAAKKTAAKKPAAKKSTAKKSTSKVE
(393) DNA topoisomerase [Bifidobacterium breve UCC2003]
7
MRRNDVDLLVNACDPDREGEAIFRRIIHHAGVNKPTRRLWVASLEEEAIRQALAAMKPEGDYRGLADSAMIRAKADWLIDMNASRAYSLVYNTRFTVGRVQTPTLAMIVERDRQIESHKPTPFWKVVAPMGSWTLTGTHLENHGTAEALLEIVNQPDFAFGIYAVKRHRQHDAPPRLYDLTNLQKDMSKLHGLTAAHTLTALQSLYEQRLTTYPRTDSRFITHDDLDALRKLTNGDRLASGFLDPAVRPAQPRLELTVNDAKVTGHTAILPTLQASGETLGQLGDDKRLVLTRVVRRMWEAVADDHVHDVTLVVANIDPDYDESHPNLLRISEADSRFTSCSDQTISLGWKGIEPTKTQEHDGGEDEEDAPAGNLIPVNLATGANAMPMPRSGARLVEGKIKPPKPYTEATLLAAMEHASRLLDDAGLKAALDDDESHSGGIGMPATRADVIEKLIRSAYVERKGKQLRSTEQGRNLINVVALRLKDVALTAEMEQVLSDVEHGNADPTQTESRFRAFAAGIPADAQSTAEPELVQARRSRVTESFGPCPRCGQPVVKTGKVWQCSTNKREKQPDGTWKDAGGCGWKLFSTIAGKTLTDANARRFLADGRIRLKGFISKAGRKFDAMLILDKEGGARFKFNDK
(158) DNA topoisomerase 1 [Bifidobacterium breve UCC2003]
8
MATKLVIVESPTKAHKIGDYLGKGYTVMASVGHIRDLAQPSQVPAADKPKFGKFGVDVNDGFKPYYIVDGDKKRTVSELKSALKGADELYLATDEDREGEAIAWHLVQTLKPKVPVKRMVFHEITKDAINASLSKTRDVDSHMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQSVATRLIVERERERMAFKRAPYWDVVATLAASDALGERTEFAARMISLGGKRLAGSKDFGSDGQLTPDGFAGSVRQLDEASATAVAEALKNADFTVMSMETKPYRRRPQPPFTTSTLQQTAGNRLGMGSRAVMRAAQSLYENGYITYMRTDSVTLSQEAITAARNAVSYHFGDKFLSAEPKQYATKTAGAQEAHECIRPAGSRFHDPDELASKLPIDQLRLYTLIWQRTLACQMADATGSTATVRLSAPAGPADGEAVFQASGTVIEFPGFMKATGEGRKPKPAAADAAAADKSGAKATKSDASESNASLPPMEVGQRVEASDIEPDGHETQPPARYTEATLVKTLEAKEIGRPSTYASIISTIMDRGYVYERGRALIPSWLAFSVTKLLETNFPKLVDYTFTAEMENGLDRIAHGEETGRDWLTHFYFGSGEGAARNADEAHEGLQQQVAQLGEIDARAINTIDIGDGLHVRVGRYGPYLEDMEHLDAEGNPKRASLPDTIAPDELTVEVAHDLTDNHSGGPRELGKDPVSGGTVEVRNGRFGPYVALVPPEGAADSAATAPAGKKSSKKAAAAASRPRMASLFKTMSPESLSLEDALKLLSLPREVGKYEETNAETGEVSECTVAANNGRYGPYLTKTSADGRSDTRSLGSEDEIFTVDIDKAKELFAQPKYGRGRGRGAAKPPLRDLGNDPNTGKHVTIKDGRFGAYITDGETNRTVPRQYTPESIAPEDAFRLLAEKRAAGPSTRGRRGRERAGAAKSGARGAKKGAASAATNAAEAKRAGRRAEVKKLANKGWSNQRIAEKLSSTAATVKKDVDWLTANEGYERPAVIPKRG
Family distribution
Taxonomy tree
Bifidobacteriales